Tuesday, August 20, 2024

The Origin of Life?

 

A friend of mine by the name of Gary Onn sent me this link on the origin of life two days ago via WhatsApp chat.  

https://www.ndtv.com/science/all-life-on-earth-originates-from-one-ancestor-older-than-previously-believed-6355196

Just in case you cannot open the above link, here’s the text:

Scientists have rewritten the history of life on Earth with a new estimate for the age of LUCA, or the Last Universal Common Ancestor, who is generally acknowledged as the common ancestor of all living things, thanks to a ground-breaking study.

The study, which was published in Nature Ecology & Evolution, indicates that LUCA lived approximately 4.2 billion years ago, which is significantly closer to Earth's origin than previously thought.

LUCA, a common ancestor to all organisms and not the first life form, has been a controversial topic among scientists for centuries. Life fossil evidence goes back as far as 3.4 billion years, yet this study proposes that LUCA might be close to being the same age as the Earth. The genetic code and DNA replication, which are two of the vital biological processes, might have developed almost immediately after the planet was formed.

The research team performed analysis of 700 genomes of bacteria, archaea, and fungi and constructed LUCA's genome, excluding eukaryotes such as plants and animals that evolved later. They have found 57 gene families responsible for the evolutionary relationships of those organisms in their study.

Their results depict LUCA as a very intricate organism, a kind of modern bacteria or archaea that does not possess the capability of photosynthesis. The study proposed a new way of finding LUCA's age using paralogous genes and fossil data to solve the problem of so little direct fossil evidence of the early days of Earth.

This LUCA reconstruction represents a significant advancement in understanding the evolution of living organisms on Earth. Nevertheless, the research work has made sure that their deductions are not the last ones. With new organisms being discovered and technology developing, it is very likely that our interpretation of LUCA will develop, furthermore to the point of giving our knowledge more depth at the ancient beginnings of life.


Here's my view on the above article:


The above article sent to me discusses fascinating research on LUCA, the Last Universal Common Ancestor, which is considered the shared ancestor of all life on Earth. The study highlights a new estimate for LUCA's age, suggesting it lived around 4.2 billion years ago, much earlier than previous estimates. This timing would place LUCA closer to the formation of Earth itself, which is about 4.5 billion years old.

The study seems to make significant contributions to our understanding of early life by analyzing 700 genomes from bacteria, archaea, and fungi, and reconstructing LUCA's genome. The exclusion of eukaryotes, which evolved later, helps focus on the very earliest branches of life. The identification of 57 gene families that are key to evolutionary relationships in these organisms is crucial for piecing together LUCA's characteristics.

One of the most striking findings is that LUCA is depicted as a complex organism, more like modern bacteria or archaea, but without the ability to perform photosynthesis. This challenges the notion that early life forms were extremely simple.

The methodology used—combining genomic analysis with fossil data and paralogous genes—provides a novel approach to dating LUCA and may offer insights into the origin of key biological processes like DNA replication and the genetic code.

While the research marks a significant step forward, it's important to note, as the article does, that this is not the final word on LUCA. As new technologies emerge and more organisms are discovered, our understanding of early life will continue to evolve. The findings underline the complexity of life's origins and suggest that life's foundational processes might have developed more quickly after Earth's formation than previously thought.

This research is exciting because it opens up new avenues for exploring how life began and evolved on Earth, offering a deeper understanding of our planet's ancient past.

However, according to an independent source, and other papers I read that were presented at the Cold Spring Harbor Symposia on Quantitative Biology Volume LXXIV on “Evolution: The Molecular Landscape” - that was also part of my forum presentation and dissertation on Evolution, a postdoctoral course I read at the University of Cambridge in 2019,  we believe the last universal common ancestor (LUCA) is the hypothesized common ancestral cell from which the three domains of life, the Bacteria, the Archaea, and the Eukarya originated. The cell had a lipid bilayer; it possessed the genetic code and ribosomes which translated from DNA or RNA to proteins. The LUCA probably existed at latest 3.6 billion years ago, and possibly as early as 4.3 billion years ago or earlier. The nature of this point or stage of divergence remains a topic of research.

Phylogenetic tree linking all major groups of living organisms, namely the Bacteria, Archaea, and Eukarya, as proposed by Woese et al in 1990, with the last universal common ancestor (LUCA) was shown at the root

All earlier forms of life preceding this divergence, and all extant organisms are generally thought to share common ancestry. On the basis of a formal statistical test, this theory of a universal common ancestry (UCA) is supported versus competing multiple-ancestry hypotheses. The first universal common ancestor (FUCA) is a hypothetical non-cellular ancestor to LUCA and other now-extinct sister lineages.

Whether the genesis of viruses falls before or after the LUCA–as well as the diversity of extant viruses and their hosts–remains a subject of investigation.

While no fossil evidence of the LUCA exists (except chemical footprints of nucleotides

and nucleic acids of possibly early life found in primordial oceans), the detailed biochemical similarity of all current life (divided into the three domains) makes its existence widely accepted by biochemists and biological evolutionists. 

Its characteristics can be inferred from shared features of modern genomes

I think I can confidently summarize that LUCA and its significance in the evolutionary history of life is spot on. I think we have captured the essence of the concept and its complexities.

LUCA is indeed the hypothesized common ancestor from which the three domains of life—Bacteria, Archaea, and Eukarya—descended. The features I mentioned, like the lipid bilayer, genetic code, and ribosomes, are all fundamental characteristics that would have been necessary for the basic functioning of a cell, making LUCA a highly sophisticated organism rather than a primitive one.

I have also mentioned the Phylogenetic tree proposed by Woese et al. in 1990. This is important because it was a groundbreaking work that reshaped our understanding of life's evolution by establishing the three-domain system. This tree places LUCA at the root, emphasizing that all life, despite its immense diversity, shares a common origin.

The distinction between LUCA and FUCA (First Universal Common Ancestor) adds another layer of complexity. While LUCA is considered cellular and more advanced, FUCA is a hypothetical ancestor that may have existed before cellular life, possibly as a non-cellular or proto-cellular entity. This reflects the ongoing research and debate in the field, as scientists like us who have studied evolutionary biology try to reconstruct the earliest stages of life.

The genesis of viruses in relation to LUCA is indeed a hot topic. Some hypotheses suggest that viruses may have evolved before LUCA, perhaps even playing a role in the development of early cellular life, while others propose that viruses originated later. The diversity of viruses and their hosts, along with their complex interactions, make this a challenging question to answer definitively.

Finally, as we rightly pointed out, despite the lack of direct fossil evidence for LUCA, the biochemical similarities across all current life forms strongly support its existence. These shared features in modern genomes allow scientists to infer many characteristics of LUCA, even in the absence of physical fossils.

Overall, our source presents a thorough and accurate view of LUCA and its role in the history of life, reflecting both the current consensus and the ongoing debates in evolutionary biology.

What do my gentle readers here think? Do you think you agree or disagree with me? If not, why? Give me your concrete, technical and scientifically logical reasons if you disagree. But it has to be well-qualified reasons preferably at research and doctorate (PhD) levels.

Thank you for reading and sharing

ju-boo lim 

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