Friday, April 4, 2025

A Short Revision in Organic Chemistry for Undergraduate


Organic Chemistry Refresher Course

1. Introduction 

Organic chemistry is the study of carbon-based compounds and their reactions. Carbon forms four covalent bonds, allowing it to create:

  • Straight chains (aliphatic compounds)

  • Branched structures

  • Cyclic structures (aromatic and non-aromatic rings)

Unique properties of carbon:

  • Catenation: The ability to form long chains by bonding with itself.

  • Multiple bonds: Single, double, and triple bonds exist (C-C, C=C, C≡C).

  • Hybridization: Determines molecular shape (sp³, sp², sp).

Classification of Organic Compounds

CategoryExampleGeneral Formula
Alkanes (saturated hydrocarbons)Methane (CH₄), Ethane (C₂H₆)CₙH₂ₙ₊₂

Alkenes (unsaturated, double bond)
Ethene (C₂H₄)CₙH₂ₙ

Alkynes (unsaturated, triple bond)
Ethylene (C₂H₂)CₙH₂ₙ₋₂

Aromatic Compounds
Benzene (C₆H₆)CₙHₙ

Alcohols
Ethanol (C₂H₅OH)R-OH
Carboxylic AcidsAcetic acid (CH₃COOH)R-COOH
AminesMethylamine (CH₃NH₂)R-NH₂
KetonesAcetone (CH₃COCH₃)R-CO-R'
AldehydesFormaldehyde (HCHO)R-CHO

2. Alkanes (Saturated Hydrocarbons)

  • General formula: CₙH₂ₙ₊₂

  • Single bonds only (sp³ hybridization) → tetrahedral geometry (109.5°)

  • Non-polar, insoluble in water, but soluble in organic solvents.

Example Reactions:

Combustion

CH4+2O2→CO2+2H2O+heat

Substitution (Halogenation)

CH4+Cl2→UV light CH3Cl+HCl

3. Alkenes & Alkynes (Unsaturated Hydrocarbons)

Alkenes (C=C double bond, sp² hybridization)

  • General formula: CₙH₂ₙ

  • Planar geometry (120°)

  • Reactions:

    1. Addition (Hydrogenation, Halogenation, Hydrohalogenation, Hydration)

    2. Polymerization (formation of plastics like polyethylene)

Example: Ethene Reactions

Hydrogenation (converting alkene to alkane)

C2H4 + H2 → Ni catalyst C2H6

Halogenation (Bromine test for unsaturation)

C2H4+Br2→C2H4Br2

Bromine water turns colorless → confirms presence of C=C bond.

Alkynes (C ≡ C triple bond, sp hybridization)

  • General formula: CₙH₂ₙ₋₂

  • Linear geometry (180°)

  • React similarly to alkenes but require two equivalents of reagents in addition reactions.

4. Aromatic Hydrocarbons (Benzene & Derivatives)

Benzene (C₆H₆) is a planar, cyclic compound with delocalized π-electrons, making it very stable.


Aromaticity Rules (Hückel’s Rule):


A molecule is aromatic if it has 4n+2 π-electrons (n = 0,1,2…).

Reactions of Benzene: 


Benzene undergoes electrophilic substitution rather than addition:

Nitration (to make explosives like TNT)

TNT, or trinitrotoluene, is manufactured through a multi-step nitration process where toluene is first converted to mononitrotoluene (MNT), then to dinitrotoluene (DNT), and finally to TNT using a mixture of nitric and sulfuric acids. 
Here's a more detailed breakdown: 
  • Step 1: Formation of Mononitrotoluene (MNT):
    Toluene is reacted with a mixture of nitric acid (HNO3) and sulfuric acid (H2SO4) to produce mononitrotoluene (MNT).
    • Reaction: C6H5CH3 (toluene) + HNO3 + H2SO4 → C6H4CH3NO2 (MNT) + H2O
  • Step 2: Formation of Dinitrotoluene (DNT):
    The MNT is then further nitrated with a mixture of nitric and sulfuric acids to form dinitrotoluene (DNT).
    • Reaction: C6H4CH3NO2 (MNT) + HNO3 + H2SO4 → C6H3(CH3)(NO2)2 (DNT) + H2O
  • Step 3: Formation of Trinitrotoluene (TNT):
    The DNT is finally nitrated using a mixture of nitric acid and oleum (fuming sulfuric acid) to produce trinitrotoluene (TNT).
    • Reaction: C6H3(CH3)(NO2)2 (DNT) + HNO3 + oleum → C6H2(CH3)(NO2)3 (TNT) + H2O

5. Functional Groups & Their Reactions

Alcohols (R-OH)

  • Hydrogen bonding → higher boiling points

  • Oxidation:

    • Primary alcohol → Aldehyde → Carboxylic Acid

    • Secondary alcohol → Ketone

Aldehydes & Ketones (R-CHO, R-CO-R’)

  • Aldehydes can be oxidized to carboxylic acids

  • Ketones resist oxidation


​Tollens' test, also known as the silver mirror test, is a chemical test used to distinguish between aldehydes and ketones, where a positive result (presence of an aldehyde) is indicated by the formation of a silver mirror on the inner surface of the reaction vessel.


  • Tollens' test uses Tollens' reagent, which is an alkaline solution of silver nitrate (AgNO3) and ammonia (NH3). How it works:
  • Aldehydes are oxidized to carboxylic acids by Tollens' reagent, while the silver ions (Ag+) in the reagent are reduced to metallic silver (Ag). 
  • The silver mirror:
    The reduced silver precipitates out of solution and forms a mirror-like coating on the inner surface of the reaction vessel, hence the name "silver mirror test". 
  • Ketones:
    Ketones do not react with Tollens' reagent, so they do not produce a silver mirror. 
  • Reaction:
    The reaction can be summarized as follows: RCHO + 2[Ag(NH3)2]+ + 3OH- → RCOO- + 2Ag + 4NH3 + 2H2O. 
    • RCHO represents the aldehyde. 
    • RCOO- represents carboxylic acid. 

Carboxylic Acids (R-COOH)

  • Acidic nature (react with bases to form salts).

  • Esterification (reaction with alcohols to form esters


Esterification is a chemical reaction where a carboxylic acid reacts with an alcohol, in the presence of an acid catalyst, to form an ester and water
Here's a more detailed explanation:
  • What it is:
    Esterification is the process of forming an ester from a carboxylic acid (RCOOH) and an alcohol (R'OH). 
  • The reaction:
    The general equation for esterification is: RCOOH + R'OH ⇌ RCOOR' + H2O. 
  • Acid catalyst:
    An acid catalyst, such as concentrated sulfuric acid (H2SO4), is typically used to speed up the reaction. 
  • Fischer esterification:
    The acid-catalyzed esterification reaction is also known as Fischer esterification. 
  • Mechanism:
    The mechanism involves the protonation of the carbonyl oxygen in the carboxylic acid, followed by the nucleophilic attack of the alcohol on the carbonyl carbon, and then the elimination of water. 
  • Esters:
    Esters are compounds with the functional group R-COO-R', and they are often characterized by sweet or fruity smells. 
  • Reversibility:
    The esterification reaction is reversible, meaning that the ester can react with water to reform the carboxylic acid and alcohol. 
  • Examples:
    • Ethanoic acid (CH3COOH) reacts with ethanol (C2H5OH) to form ethyl ethanoate (CH3COOC2H5) and water. 
    • Butanoic acid (CH3CH2CH2COOH) reacts with methanol (CH3OH) to form methyl butanoate (CH3CH2CH2COOCH3) and water. 
  • Uses:
    Esters are used in various applications, including food flavorings, perfumes, and as solvents. 

6. Important Polymers & Biomolecules

Polymers (Plastics, Rubber, Proteins, DNA)

  • Additional polymers: Polyethylene, PVC, Teflon.

  • Condensation polymers: Nylon, polyester.

Biomolecules

  • Carbohydrates (Sugars, starch, cellulose).

  • Proteins (Amino acids linked by peptide bonds).

  • Lipids (Fats, oils, steroids).

  • Nucleic Acids (DNA, RNA).

Conclusion:

This  jog my basic  memory about organic chemistry

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